Package: kmer
Type: Package
Title: Fast K-Mer Counting and Clustering for Biological Sequence
        Analysis
Version: 1.1.3
Authors@R: person("Shaun", "Wilkinson", role = c("aut", "cre"),
                     email = "shaunpwilkinson@gmail.com")
Author: Shaun Wilkinson [aut, cre]
Maintainer: Shaun Wilkinson <shaunpwilkinson@gmail.com>
Description: Contains tools for rapidly computing distance matrices and
        clustering large sequence datasets using fast alignment-free
        k-mer counting and recursive k-means partitioning. See Vinga
        and Almeida (2003) <doi:10.1093/bioinformatics/btg005> for a
        review of k-mer counting methods and applications for
        biological sequence analysis.
License: GPL-3
Encoding: UTF-8
URL: https://github.com/shaunpwilkinson/kmer
BugReports: https://github.com/shaunpwilkinson/kmer/issues
Imports: openssl, phylogram, Rcpp (>= 0.12.13)
Suggests: ape (>= 4.0), dendextend, knitr, rmarkdown, testthat
LinkingTo: Rcpp
VignetteBuilder: knitr
RoxygenNote: 7.3.1
Config/pak/sysreqs: libssl-dev
Repository: https://shaunpwilkinson.r-universe.dev
Date/Publication: 2026-01-23 02:05:12 UTC
RemoteUrl: https://github.com/shaunpwilkinson/kmer
RemoteRef: HEAD
RemoteSha: 1b28b44796ab4b6d5db68b8b9ba935f0abdc9090
NeedsCompilation: yes
Packaged: 2026-06-24 09:56:09 UTC; root