Package: kmer 1.1.2.9000
kmer: Fast K-Mer Counting and Clustering for Biological Sequence Analysis
Contains tools for rapidly computing distance matrices and clustering large sequence datasets using fast alignment-free k-mer counting and recursive k-means partitioning. See Vinga and Almeida (2003) <doi:10.1093/bioinformatics/btg005> for a review of k-mer counting methods and applications for biological sequence analysis.
Authors:
kmer_1.1.2.9000.tar.gz
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kmer_1.1.2.9000.tgz(r-4.4-x86_64)kmer_1.1.2.9000.tgz(r-4.4-arm64)kmer_1.1.2.9000.tgz(r-4.3-x86_64)kmer_1.1.2.9000.tgz(r-4.3-arm64)
kmer_1.1.2.9000.tar.gz(r-4.5-noble)kmer_1.1.2.9000.tar.gz(r-4.4-noble)
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kmer.pdf |kmer.html✨
kmer/json (API)
| # Install 'kmer' in R: |
| install.packages('kmer', repos = c('https://shaunpwilkinson.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/shaunpwilkinson/kmer/issues
Last updated 6 years agofrom:d9781af956. Checks:OK: 1 NOTE: 8. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 07 2024 |
| R-4.5-win-x86_64 | NOTE | Nov 07 2024 |
| R-4.5-linux-x86_64 | NOTE | Nov 07 2024 |
| R-4.4-win-x86_64 | NOTE | Nov 07 2024 |
| R-4.4-mac-x86_64 | NOTE | Nov 07 2024 |
| R-4.4-mac-aarch64 | NOTE | Nov 07 2024 |
| R-4.3-win-x86_64 | NOTE | Nov 07 2024 |
| R-4.3-mac-x86_64 | NOTE | Nov 07 2024 |
| R-4.3-mac-aarch64 | NOTE | Nov 07 2024 |
Exports:clusterkcountkdistancembedotu
Dependencies:apeaskpassdigestlatticenlmeopensslphylogramRcppsys
